Arabic Oud player
Just me with a nice small waterfall in Japan

Hello, I'm Ahmed Shalaby

I’m a second year PhD student in DNA computing and Theoretical Computer Science at Hamilton Institute, Maynooth University, Ireland. I work with my supervisor Professor Damien Woods in the TAPDANCE research group where we carry out fundamental research on molecular computers.

My current work focuses on analyzing the thermodynamic properties of DNA systems by designing an efficient algorithms that are able to predict how these systems will behave. I am also interested in kinetic analysis and conducting wet-lab experiments to see if we can speed up some computational DNA systems.

Previously, during my Masters, my work focused on computer vision, and how to use deep learning to bulid more efficient authentication systems for IoT environments based on iris recognition.

Publications

2023

Minimum free energy, partition function and kinetics simulation algorithms for a multistranded SDC

Ahmed Shalaby, Chris Thachuk, Damien Woods

DNA29: The 29th International Conference on DNA Computing and Molecular Programming Schloss Dagstuhl—Leibniz-Zentrum für Informatik LIPIcs:1:1--1:22, 2023.

2022

Facet TAM: An abstract tile assembly model with facet growth

Ahmed Shalaby, Constantine Evans, Damien Woods

DNA28: The 28th International Conference on DNA Computing and Molecular Programming, August 8-12, 2022.

2021

An efficient multi-factor authentication scheme based CNNs for securing ATMs over cognitive-IoT

Ahmed Shalaby, Ramadan Gad, Ezz El-Din Hemdan, Nawal El-Fishawy

PeerJ Computer Science Journal.

An efficient CNN based encrypted Iris recognition approach in cognitive-IoT system

Ahmed Shalaby, Ramadan Gad, Ezz El-Din Hemdan, Nawal El-Fishawy

Multimedia Tools and Applications (2021) 80:26273–26296, Springer.

Iris Recognition for Internet of Things Security

Ahmed Shalaby

Master's thesis.

Talks

2023

The Curse of Hamilton's Chairs

Ahmed Shalaby

Hamilton Institute Student Seminar Series [15 Nov, 2023].

Minimum free energy, partition function and kinetics simulation algorithms for a multistranded SDC

Ahmed Shalaby

DNA29: The 29th International Conference on DNA Computing and Molecular Programming, Tohoku University, Sendai, Japan [11 Sep, 2023].

Thermodynamics of a multistranded one-dimension Scaffolded DNA Computer

Ahmed Shalaby

Computer Science depatartment workshop [12 June, 2023].

Contact

Email

ahmed.shalaby.2023@mumail.ie

Location

Room 340, 3rd Floor, Eolas Building